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@@ -29,40 +29,40 @@ Below is an exhaustive catalog of every critical file in the repository, detaili
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| File Path | Purpose & Technical Responsibility | Commit | Author | Commit Date | Last Commit Message |
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| :--- | :--- | :--- | :--- | :--- | :--- |
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-| **app.py**<br>`./app.py` | Core Streamlit Web Application. Hosts the clinical food search engine, the RAG chat dietitian interface (utilizing Ollama and SearXNG tool calling), and the visual plate builder. | `6b02c9a` | Lange François | 2026/06/14 20:40:11 | *[#1] Configure dynamic git filters, add WSL setup runbooks/telemetry, and clean dead files* |
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-| **ingest_csv.py**<br>`./ingest_csv.py` | High-performance background database loader. Stream-reads and batch-inserts the 3GB OpenFoodFacts dataset into MySQL using Pandas chunking and optimizes indices post-load. | `6b02c9a` | Lange François | 2026/06/14 20:40:11 | *[#1] Configure dynamic git filters, add WSL setup runbooks/telemetry, and clean dead files* |
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+| **app.py**<br>`./app.py` | Core Streamlit Web Application. Hosts the clinical food search engine, the RAG chat dietitian interface (utilizing Ollama and SearXNG tool calling), and the visual plate builder. | `1e316d1` | Lange François | 2026/06/16 09:25:09 | *[#1] Render Mermaid flowcharts, relative cross-linking, and clean up RCS $ placeholders* |
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+| **ingest_csv.py**<br>`./ingest_csv.py` | High-performance background database loader. Stream-reads and batch-inserts the 3GB OpenFoodFacts dataset into MySQL using Pandas chunking and optimizes indices post-load. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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| **unit_converter.py**<br>`./unit_converter.py` | Mathematical converter engine that parses natural recipe volume inputs (e.g. cups, spoons) and converts them to metric weights based on macro density mappings. | `e758e4f` | Lange François | 2026/06/15 04:29:33 | *[#1] Update regenerated documentation PDFs and Git filters placeholders* |
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-| **snmp_notifier.py**<br>`./snmp_notifier.py` | Observability SNMP utility. Formulates and transmits raw SNMP trap payloads to the central Zabbix monitoring server on critical application failures. | `58c3849` | Lange François | 2026/06/12 10:06:29 | *[#1] chore: update default models, rewrite allergen check to use cached LLM, and update README grading layout* |
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-| **configure_zabbix_alerts.py**<br>`./configure_zabbix_alerts.py` | DevOps provisioning script. Uses the Zabbix API to automatically set up host groups, custom templates, items, triggers, actions, and media types for alerts. | `58c3849` | Lange François | 2026/06/12 10:06:29 | *[#1] chore: update default models, rewrite allergen check to use cached LLM, and update README grading layout* |
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-| **configure_zabbix_email.py**<br>`./configure_zabbix_email.py` | Security & Monitoring. Configures email media types and SMTP server routes for Zabbix alert notifications on system downtime. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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+| **snmp_notifier.py**<br>`./snmp_notifier.py` | Observability SNMP utility. Formulates and transmits raw SNMP trap payloads to the central Zabbix monitoring server on critical application failures. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **configure_zabbix_alerts.py**<br>`./configure_zabbix_alerts.py` | DevOps provisioning script. Uses the Zabbix API to automatically set up host groups, custom templates, items, triggers, actions, and media types for alerts. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **configure_zabbix_email.py**<br>`./configure_zabbix_email.py` | Security & Monitoring. Configures email media types and SMTP server routes for Zabbix alert notifications on system downtime. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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| **zabbix_telemetry.py**<br>`./zabbix_telemetry.py` | Monitoring agent daemon. Queries active application statistics, memory, and query timers to supply Zabbix telemetry indicators. | `e758e4f` | Lange François | 2026/06/15 04:29:33 | *[#1] Update regenerated documentation PDFs and Git filters placeholders* |
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-| **check_users.py**<br>`./check_users.py` | Security utility. Verifies user accounts inside the MySQL `users` table and checks password hashing complexity. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **rotate_passwords.py**<br>`./rotate_passwords.py` | Administrative credential utility. Cycles and re-encrypts database passwords within the `.env` secret file. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **myloginpath.py**<br>`./myloginpath.py` | MySQL credential companion helper that simplifies the generation of encrypted login path configuration profiles. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **data_sync.sh**<br>`./data_sync.sh` | Master pipeline coordinator. Supports download fetching in --online mode and local file processing in offline fallback mode. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **backup_db.sh**<br>`./backup_db.sh` | Resiliency backup automation. Runs mysqldump on user tables inside the active container and prunes backups older than 7 days. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **reset.sh**<br>`./reset.sh` | Teardown script. Wipes local temporary containers and prunes volume locks during crashes. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **proper_reset.sh**<br>`./proper_reset.sh` | High-level administrative wipe script that brings the entire network stack and repositories back to a pristine state. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **deploy.sh**<br>`./deploy.sh` | Naked OS installation guide. Installs necessary system packages, Python venv libraries, and native Ollama. | `6b02c9a` | Lange François | 2026/06/14 20:40:11 | *[#1] Configure dynamic git filters, add WSL setup runbooks/telemetry, and clean dead files* |
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-| **start_batch_ingest.sh**<br>`./start_batch_ingest.sh` | Asynchronous background shell script wrapping the main csv ingestion stream inside a detached session. | `6b02c9a` | Lange François | 2026/06/14 20:40:11 | *[#1] Configure dynamic git filters, add WSL setup runbooks/telemetry, and clean dead files* |
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-| **download_csv.sh**<br>`./download_csv.sh` | Downloader helper script that fetches specific smaller subsets of OpenFoodFacts CSV files. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **master_trigger.sh**<br>`./master_trigger.sh` | Orchestrator script that wakes and verifies multiple secondary subservices in sequence. | `6b02c9a` | Lange François | 2026/06/14 20:40:11 | *[#1] Configure dynamic git filters, add WSL setup runbooks/telemetry, and clean dead files* |
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-| **manage_services.sh**<br>`./manage_services.sh` | DevOps service manager script. Handles automated, sequential startup, shutdown, restart, and health checking of all container elements in the stack. | `6b02c9a` | Lange François | 2026/06/14 20:40:11 | *[#1] Configure dynamic git filters, add WSL setup runbooks/telemetry, and clean dead files* |
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-| **generate_docs.py**<br>`./generate_docs.py` | Dynamic doc generator. Generates and mirrors all markdown manuals under `/docs` with live Git log metadata injection. | `ef4111d` | Lange François | 2026/06/14 20:56:15 | *[#1] Configure mirror repositories and dynamic git filter sanitization* |
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-| **docker-compose.yml**<br>`./docker-compose.yml` | Main 10-container Docker orchestration map defining MySQL, App UI, Ollama Engine, SearXNG, Nginx proxy, Airflow stack, and Zabbix server suites. | `80c89df` | Lange François | 2026/06/12 08:46:09 | *[#1] chore: pass LLM_MODEL env var and mount .env to app service in docker-compose configs* |
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-| **docker-compose_skip.yml**<br>`./docker-compose_skip.yml` | Resilient 8-container offline/local single-node orchestration manifest. | `80c89df` | Lange François | 2026/06/12 08:46:09 | *[#1] chore: pass LLM_MODEL env var and mount .env to app service in docker-compose configs* |
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-| **docker-compose-wsl.yml**<br>`./docker-compose-wsl.yml` | WSL2-specific Docker Compose configuration file. Configures services with a +20 port shift to guarantee zero port conflicts on developer workstations. | `80c89df` | Lange François | 2026/06/12 08:46:09 | *[#1] chore: pass LLM_MODEL env var and mount .env to app service in docker-compose configs* |
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+| **check_users.py**<br>`./check_users.py` | Security utility. Verifies user accounts inside the MySQL `users` table and checks password hashing complexity. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **rotate_passwords.py**<br>`./rotate_passwords.py` | Administrative credential utility. Cycles and re-encrypts database passwords within the `.env` secret file. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **myloginpath.py**<br>`./myloginpath.py` | MySQL credential companion helper that simplifies the generation of encrypted login path configuration profiles. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **data_sync.sh**<br>`./data_sync.sh` | Master pipeline coordinator. Supports download fetching in --online mode and local file processing in offline fallback mode. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **backup_db.sh**<br>`./backup_db.sh` | Resiliency backup automation. Runs mysqldump on user tables inside the active container and prunes backups older than 7 days. | `1e316d1` | Lange François | 2026/06/16 09:25:09 | *[#1] Render Mermaid flowcharts, relative cross-linking, and clean up RCS $ placeholders* |
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+| **reset.sh**<br>`./reset.sh` | Teardown script. Wipes local temporary containers and prunes volume locks during crashes. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **proper_reset.sh**<br>`./proper_reset.sh` | High-level administrative wipe script that brings the entire network stack and repositories back to a pristine state. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **deploy.sh**<br>`./deploy.sh` | Naked OS installation guide. Installs necessary system packages, Python venv libraries, and native Ollama. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **start_batch_ingest.sh**<br>`./start_batch_ingest.sh` | Asynchronous background shell script wrapping the main csv ingestion stream inside a detached session. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **download_csv.sh**<br>`./download_csv.sh` | Downloader helper script that fetches specific smaller subsets of OpenFoodFacts CSV files. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **master_trigger.sh**<br>`./master_trigger.sh` | Orchestrator script that wakes and verifies multiple secondary subservices in sequence. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **manage_services.sh**<br>`./manage_services.sh` | DevOps service manager script. Handles automated, sequential startup, shutdown, restart, and health checking of all container elements in the stack. | `1e316d1` | Lange François | 2026/06/16 09:25:09 | *[#1] Render Mermaid flowcharts, relative cross-linking, and clean up RCS $ placeholders* |
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+| **generate_docs.py**<br>`./generate_docs.py` | Dynamic doc generator. Generates and mirrors all markdown manuals under `/docs` with live Git log metadata injection. | `6caac32` | Lange François | 2026/06/16 19:07:16 | *[#1] Remove emojis from markdown manuals to eliminate system symbol font dependencies, and use portable relative font paths in CSS* |
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+| **docker-compose.yml**<br>`./docker-compose.yml` | Main 10-container Docker orchestration map defining MySQL, App UI, Ollama Engine, SearXNG, Nginx proxy, Airflow stack, and Zabbix server suites. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **docker-compose_skip.yml**<br>`./docker-compose_skip.yml` | Resilient 8-container offline/local single-node orchestration manifest. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **docker-compose-wsl.yml**<br>`./docker-compose-wsl.yml` | WSL2-specific Docker Compose configuration file. Configures services with a +20 port shift to guarantee zero port conflicts on developer workstations. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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| **alembic.ini**<br>`./alembic.ini` | Alembic configuration setting routing database connection URIs for versioning schemas. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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| **my.cnf**<br>`./my.cnf` | Custom tuned MySQL database performance settings enabling local_infile data loading and index page buffers. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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| **.env**<br>`./.env` | Secret storage container holding encrypted MySQL user passwords and active environment flags. | `ca3877d` | lanfr144 | 2026/05/13 11:15:42 | *Stop save the .env file* |
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-| **.gitattributes**<br>`./.gitattributes` | Git clean/smudge layout mapping enabling automatic tracking of dynamic $Id$ metadata expansion within version files. | `60823f3` | Lange François | 2026/06/12 09:28:53 | *[#1] docs: update README.md grading criteria, add Technical Document and User Manual, fix app.py version parsing* |
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-| **requirements.txt**<br>`./requirements.txt` | Python runtime dependency catalog storing strict library versioning constraints. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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+| **.gitattributes**<br>`./.gitattributes` | Git clean/smudge layout mapping enabling automatic tracking of dynamic #ident "@(#)$Format:LocalFoodAI_lanfr144:project_report.md:%an:%ae:%ad:%cn:%ce:%cd:%H:%D:%N$" metadata expansion within version files. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **requirements.txt**<br>`./requirements.txt` | Python runtime dependency catalog storing strict library versioning constraints. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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| **INSTALL_WSL.md**<br>`./INSTALL_WSL.md` | WSL2 deployment guide. Provides step-by-step instructions for installing and deploying the application inside WSL2 with port shifts. | `129180a` | Lange François | 2026/06/15 12:49:05 | *[#1] Add Developer and Agent Productivity Guidelines to guides and agent workflows* |
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| **taiga/local-food-ai-1-36f35ff9-da1b-4eb5-9309-058448c998ad.json**<br>`./taiga/local-food-ai-1-36f35ff9-da1b-4eb5-9309-058448c998ad.json` | Historical Taiga Agile export. Contains the complete project history, including all closed user stories, tasks, and sprint configurations. | `d768ead` | Lange François | 2026/06/01 07:44:40 | *TG-221 #closed - Last commit to sync all the file to ship to the teacher.* |
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-| **scripts/generate_pdfs.py**<br>`./scripts/generate_pdfs.py` | PDF document builder. Converts all markdown documentation manuals under `/docs` into high-fidelity PDF format with expanded Git version headers. | `5001e1d` | Lange François | 2026/06/16 05:48:13 | *[#1] Force global dark text colors and optimize PDF structures to resolve Acrobat save prompts* |
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-| **scripts/generate_project_report.py**<br>`./scripts/generate_project_report.py` | Technical project report generator. Automatically gathers codebase structure, Git commit metadata, and purpose records to construct the Project.pdf report. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **scripts/setup_deploy.py**<br>`./scripts/setup_deploy.py` | DevOps deployment script. Orchestrates local and VM container sets, verifying network connectivity and system parameters. | `1701828` | Lange François | 2026/06/11 08:26:59 | *[TG-131] Purge database passwords from tracked files and format application versioning* |
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-| **scripts/taiga_sync_final.py**<br>`./scripts/taiga_sync_final.py` | Taiga automated synchronization helper. Pushes bug tickets, fills wiki pages, and assigns unassigned user stories. | `744ffe8` | Lange François | 2026/06/11 10:34:49 | *[#1] chore: resolve security leak, configure dynamic versioning filters, update Streamlit and Flask applications to read version from %cd, update unit converter, ingestion, and search features, and export Taiga scrum data* |
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+| **scripts/generate_pdfs.py**<br>`./scripts/generate_pdfs.py` | PDF document builder. Converts all markdown documentation manuals under `/docs` into high-fidelity PDF format with expanded Git version headers. | `6caac32` | Lange François | 2026/06/16 19:07:16 | *[#1] Remove emojis from markdown manuals to eliminate system symbol font dependencies, and use portable relative font paths in CSS* |
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+| **scripts/generate_project_report.py**<br>`./scripts/generate_project_report.py` | Technical project report generator. Automatically gathers codebase structure, Git commit metadata, and purpose records to construct the Project.pdf report. | `1e316d1` | Lange François | 2026/06/16 09:25:09 | *[#1] Render Mermaid flowcharts, relative cross-linking, and clean up RCS $ placeholders* |
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+| **scripts/setup_deploy.py**<br>`./scripts/setup_deploy.py` | DevOps deployment script. Orchestrates local and VM container sets, verifying network connectivity and system parameters. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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+| **scripts/taiga_sync_final.py**<br>`./scripts/taiga_sync_final.py` | Taiga automated synchronization helper. Pushes bug tickets, fills wiki pages, and assigns unassigned user stories. | `a701972` | Lange François | 2026/06/16 18:25:32 | *[#1] Fix PDF corruption via renormalization and add Uninstall Guide for WSL and Windows* |
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